PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0340s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 290aa    MW: 33095.9 Da    PI: 6.5172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0340s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183484155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++ GVr+++ +g+WvAeI+d +   +r r +lg+f taeeAa+a+++a+  l+g
  Kalax.0340s0007.1.p 34 KKFVGVRQRP-SGKWVAEIKDTT---QRIRMWLGTFETAEEAARAYDEAACLLRG 84
                         589*******.7*********43...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.92E-323491No hitNo description
PfamPF008471.0E-123584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-273591IPR001471AP2/ERF domain
PROSITE profilePS5103219.523592IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-193592IPR016177DNA-binding domain
SMARTSM003806.7E-353598IPR001471AP2/ERF domain
PRINTSPR003675.1E-83647IPR001471AP2/ERF domain
PRINTSPR003675.1E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEIQFQEQNS PCLSYATCQQ GRVQDRKVGS NRNKKFVGVR QRPSGKWVAE IKDTTQRIRM  60
WLGTFETAEE AARAYDEAAC LLRGSNTRTN FVYHGSTPIS ALPLKIRNQL IQKKNNVKKQ  120
KQILPLSKPS TISIPRVTTT PVSSSQYSND SGKSNSTANS TVSFDGTNEE MRRLENAYRP  180
DLSNCYGELE QDTYLFDQSW AFPNGFDQLH LNPDEFQFQM SKYEDCLFPA TTGTDEVQIT  240
TEFDLMRVQR QISASLYAMN GVNEYLEHKT ESSEDIWDLQ HLYKLFCAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-153291262ATERF1
3gcc_A4e-153291262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283627.15e-76PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLD7SLK55e-76D7SLK5_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g00490.t011e-75(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-36related to AP2 11